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It would have been unlike Samuel P. Huntington to say “I told you so” after 9/11. He is too austere and serious a man, with a legendary career as arguably the most influential and original political scientist of the last half century — always swimming against the current of prevailing opinion.

In the 1990s, first in an article in the magazine Foreign Affairs, then in a book published in 1996 under the title “The Clash of Civilizations and the Remaking of World Order,” he had come forth with a thesis that ran counter to the zeitgeist of the era and its euphoria about globalization and a “borderless” world. After the cold war, he wrote, there would be a “clash of civilizations.” Soil and blood and cultural loyalties would claim, and define, the world of states.

Huntington’s cartography was drawn with a sharp pencil. It was “The West and the Rest”: the West standing alone, and eight civilizations dividing the rest — Latin American, African, Islamic, Sinic, Hindu, Orthodox, Buddhist and Japanese. And in this post-cold-war world, Islamic civilization would re-emerge as a nemesis to the West. Huntington put the matter in stark terms: “The relations between Islam and Christianity, both Orthodox and Western, have often been stormy. Each has been the other’s Other. The 20th-century conflict between liberal democracy and Marxist-Leninism is only a fleeting and superficial historical phenomenon compared to the continuing and deeply conflictual relation between Islam and Christianity.”

Those 19 young Arabs who struck America on 9/11 were to give Huntington more of history’s compliance than he could ever have imagined. He had written of a “youth bulge” unsettling Muslim societies, and young Arabs and Muslims were now the shock-troops of a new radicalism. Their rise had overwhelmed the order in their homelands and had spilled into non-Muslim societies along the borders between Muslims and other peoples. Islam had grown assertive and belligerent; the ideologies of Westernization that had dominated the histories of Turkey, Iran and the Arab world, as well as South Asia, had faded; “indigenization” had become the order of the day in societies whose nationalisms once sought to emulate the ways of the West.

Rather than Westernizing their societies, Islamic lands had developed a powerful consensus in favor of Islamizing modernity. There was no “universal civilization,” Huntington had observed; this was only the pretense of what he called “Davos culture,” consisting of a thin layer of technocrats and academics and businessmen who gather annually at that watering hole of the global elite in Switzerland.

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Fouad Ajami is a professor of Middle Eastern studies at the School of Advanced International Studies, Johns Hopkins University, and the author, most recently, of “The Foreigner’s Gift.”